Régine Vignes-Lebbe

Contact
Université Pierre et Marie Curie-Paris6 ;
ISYEB, UMR7205

MNHN Department Histoire de la Terre

Géologie building, CP48

57 rue Buffon, F-75005 Paris (France)

tel : 01.40.79.80.61 (+33 1 40 79 80 61)

Position :Professor at the University Pierre et Marie Curie (Paris6)

Research domain : Biodiversity informatics (databasing, knowledge representation, classification methods, biological identification with computer, analysis of descriptive data)

Responsabily

Scientific coordinator of french GBIF node More…

Coordination of the master « Systématique Evolution et Paléontologie » (UPMC-MNHN), and for the specific cursus « Biodiversity informatics ».
Teaching

I teach statistiques and the use of informatics at the licence level (L2 and L3).

For the master « Systématique, Evolution et Paléontologie » my participation is related to concepts and practices in Taxonomy, discrimination and identification methods, databasing and data analysis, formalization and knowledge representation …

Some lecture for a module of the research school of the MNHN, entitled « Three-item analysis in systematics and biogeography »and for a module on Collections.

Publications

Troudet, J., Vignes-Lebbe, R., Grandcolas, P., & Legendre, F. (2018). The increasing disconnection of primary biodiversity data from specimens: How does it happen and how to handle it?. Systematic biology, 67(6), 1110-1119.
Jouveau S., Delaunay M., Vignes-Lebbe R. & Nattier R., (2018). A multi-access identification key based on colour patterns in ladybirds (Coleoptera,Coccinellidae). ZooKeys . N° 758, p. 55-73. ISSN: 1313-2989. https://dx.doi.org/10.3897/zookeys
Dubuisson J.-Y., Bouquin S. & Vignes-Lebbe R., 2018 — Outil d’identification informatisé : Xper et Orchidées de France métropolitaine. L’Orchidophile. Vol. 219, p. 311-318.
Troudet, J., Grandcolas, P., Blin, A., Vignes-Lebbe R.& Legendre F. (2017). Taxonomic bias in biodiversity data and societal preferences. Scientific reports 7 (1), 9132.
Joly, P., & Vignes-Lebbe, R. (2017). Les collections muséologiques. In M. Bouzeghoub & R. Mosseri (Eds.), Les Big Data à découvert (pp. 50-51). Paris: CNRS.
Vignes-Lebbe, R. (2017). Langage naturel, langage formel et description du vivant. In T. Gaudin, D. Lacroix, M.-C. Maurel & J. C. Pomerol (Eds.), Sciences de la Vie et Sciences de l’Information . London: ISTE Editions.
Diep Thi M-H., Gurgand J., Vignes Lebbe R., Nguyen H-P., Nguyen B-L., Haevermans T. (2016). Bambous d’Indochine: descripteurs morphologiques pour l’identification. Science and Technology Commitee. Viet nam National University of Ho Chi Minh city. 269 p. ISBN 978-604-73-4238-9
Vignes Lebbe R., Chesselet P., Diep Thi M-H. (2016). Xper3: new tools for collaborating, training and transmitting knowledge on botanical phenotypes. In « Botanists of the twenty-first century: roles, challenges and opportunities », Noëline R. Rakotoarisoa, Stephen Blackmore and Bernard Riera editors, UNESCO, Paris ISBN 978-92-3-100120-8. 228-239
Cavoto, P., Cardoso, V., Lebbe, R., and Santanche, A. (2015). Fishgraph: A network-driven data analysis (submitted)
Grand, A.; Lebbe, R.V.; Santanche, A., « From Phenotypes to Trees of Life: A Metamodel-Driven Approach for the Integration of Taxonomy Models, » in e-Science (e-Science), 2014 IEEE 10th International Conference on , vol.1, no., pp.65-72, 20-24 Oct. 2014
doi: 10.1109/eScience.2014.48
Thacker RW, Díaz MC, Kerner A, Vignes-Lebbe R, Segerdell E, Haendel MA, Mungall CJ. 2014. The Porifera Ontology (PORO): enhancing sponge systematics with an anatomy ontology. Journal of Biomedical Semantics 5:39. doi: 10.1186/2041-1480-5-39.
Chrétiennot-Dinet M-J, Desreumaux N, Vignes-Lebbe R. An interactive key to the Chrysochromulina species (Haptophyta) described in the literature. PhytoKeys 2014;(34):47-60. doi:10.3897/phytokeys.34.6242.
Hardisty A., Roberts D. and The Biodiversity Informatics Community 2013. A decadal view of biodiversity informatics: challenges and priorities. BMC Ecology, 13:16.
Thomas Burguiere, Florian Causse, Visotheary Ung, and Régine Vignes-Lebbe, 2013:

IKey+: A New Single-Access Key Generation Web Service
Syst Biol (2013) 62(1): 157-161.
Zaragüeta-Bagils R., Ung V., Grand A., Vignes-Lebbe R., Cao N., Ducasse J, 2012 : LisBeth : New cladistics for phylogenetics and biogeography. C.R Palevol 11(8):563-566.
Mathieu Bruno, Cêtre-Sossah Catherine, Garros Claire, Chavernac David, Balenghien Thomas, Carpenter Simon, Setier-Rio Marie-Laure, Vignes-Lebbe Régine, Ung Visotheary, Candolfi Ermanno and Delécolle Jean-Claude, 2012. Development and validation of IIKC: an interactive identification key for Culicoides (Diptera: Ceratopogonidae) females from the Western Palaearctic region. Parasites & Vectors 2012, 5:137 doi:10.1186/1756-3305-5-137
Kerner A., Vignes Lebbe R. & Debrenne F. (2011).- Computer-aided identification of the Archaeocyatha genera now available online.- Carnets de Géologie – Notebooks on Geology, Brest, Letter 2011/02 (CG2011_L02), p. 99-102, 2 figs. voir…
Nimis P.L., Vignes Lebbe R. (eds.), 2010 : Tools for Identifying Biodiversity: Progress and Problems. ISBN 978-88-8303-295-0, EUT, 455 pp. voir…
Ung V., Dubus G., Zaragüeta-Bagils R. & Vignes-Lebbe R., 2010 : Xper²: introducing e-Taxonomy. Bioinformatics, Vol. 26, Num.5: 703-704.
Zaragüeta-Bagils R., Bourdon E., Ung V., Vignes-Lebbe R. et Malécot V., 2009 : Comments on the International Code of Area Nomenclature. Journal of Biogeography, 38 : 1617-1619.
Messiaen S., Vignes-Lebbe R., Aragon S., 2008. La reflexion semantica: primera etapa en el proceso de informatizacion de una coleccion universitaria de ciencias naturals con vocacion pedagogica. Revista de Museologia #43: 56-65.
Cao, N., Zaragüeta-Bagils, R. & Vignes-Lebbe, R. , 2007. A hierarchical representation of the hypothesis of homology. Geodiversitas 29:5-15.
Jacques, F. Gallut, C. Vignes-Lebbe, R. & Zaragüeta Bagils, R., 2007. Resolving phylogenetic reconstruction in Menispermaceae (Ranunculales) using fossils and a novel statistical test. Taxon 56 (2) : 379-392