Régine Vignes-Lebbe

Contact
Université Pierre et Marie Curie-Paris6 ;
ISYEB, UMR7205


MNHN Department Histoire de la Terre

Géologie building, CP48

57 rue Buffon, F-75005 Paris (France)


tel : 01.40.79.80.61 (+33 1 40 79 80 61)

email : regine.vignes_lebbe

Position :Professor at the University Pierre et Marie Curie (Paris6)

Research domain : Biodiversity informatics (databasing, knowledge representation, classification methods, biological identification with computer, analysis of descriptive data)

Responsabily

Scientific coordinator of french GBIF node More…

Coordination of the master “Systématique Evolution et Paléontologie” (UPMC-MNHN), and for the specific cursus “Biodiversity informatics”.
Teaching

I teach statistiques and the use of informatics at the licence level (L2 and L3).

For the master “Systématique, Evolution et Paléontologie” my participation is related to concepts and practices in Taxonomy, discrimination and identification methods, databasing and data analysis, formalization and knowledge representation …

Some lecture for a module of the research school of the MNHN, entitled “Three-item analysis in systematics and biogeography”and for a module on Collections.

Publications

  • Troudet, J., Vignes-Lebbe, R., Grandcolas, P., & Legendre, F. (2018). The increasing disconnection of primary biodiversity data from specimens: How does it happen and how to handle it?. Systematic biology, 67(6), 1110-1119.
  • Jouveau S., Delaunay M., Vignes-Lebbe R. & Nattier R., (2018). A multi-access identification key based on colour patterns in ladybirds (Coleoptera,Coccinellidae). ZooKeys . N° 758, p. 55-73. ISSN: 1313-2989. https://dx.doi.org/10.3897/zookeys
  • Dubuisson J.-Y., Bouquin S. & Vignes-Lebbe R., 2018 — Outil d’identification informatisé : Xper et Orchidées de France métropolitaine. L’Orchidophile. Vol. 219, p. 311-318.
  • Troudet, J., Grandcolas, P., Blin, A., Vignes-Lebbe R.& Legendre F. (2017). Taxonomic bias in biodiversity data and societal preferences. Scientific reports 7 (1), 9132.
  • Joly, P., & Vignes-Lebbe, R. (2017). Les collections muséologiques. In M. Bouzeghoub & R. Mosseri (Eds.), Les Big Data à découvert (pp. 50-51). Paris: CNRS.
  • Vignes-Lebbe, R. (2017). Langage naturel, langage formel et description du vivant. In T. Gaudin, D. Lacroix, M.-C. Maurel & J. C. Pomerol (Eds.), Sciences de la Vie et Sciences de l’Information . London: ISTE Editions.
  • Diep Thi M-H., Gurgand J., Vignes Lebbe R., Nguyen H-P., Nguyen B-L., Haevermans T. (2016). Bambous d’Indochine: descripteurs morphologiques pour l’identification. Science and Technology Commitee. Viet nam National University of Ho Chi Minh city. 269 p. ISBN 978-604-73-4238-9
  • Vignes Lebbe R., Chesselet P., Diep Thi M-H. (2016). Xper3: new tools for collaborating, training and transmitting knowledge on botanical phenotypes. In “Botanists of the twenty-first century: roles, challenges and opportunities”, Noëline R. Rakotoarisoa, Stephen Blackmore and Bernard Riera editors, UNESCO, Paris ISBN 978-92-3-100120-8. 228-239
  • Cavoto, P., Cardoso, V., Lebbe, R., and Santanche, A. (2015). Fishgraph: A network-driven data analysis (submitted)
  • Grand, A.; Lebbe, R.V.; Santanche, A., “From Phenotypes to Trees of Life: A Metamodel-Driven Approach for the Integration of Taxonomy Models,” in e-Science (e-Science), 2014 IEEE 10th International Conference on , vol.1, no., pp.65-72, 20-24 Oct. 2014
    doi: 10.1109/eScience.2014.48
  • Thacker RW, Díaz MC, Kerner A, Vignes-Lebbe R, Segerdell E, Haendel MA, Mungall CJ. 2014. The Porifera Ontology (PORO): enhancing sponge systematics with an anatomy ontology. Journal of Biomedical Semantics 5:39. doi: 10.1186/2041-1480-5-39.
  • Chrétiennot-Dinet M-J, Desreumaux N, Vignes-Lebbe R. An interactive key to the Chrysochromulina species (Haptophyta) described in the literature. PhytoKeys 2014;(34):47-60. doi:10.3897/phytokeys.34.6242.
  • Hardisty A., Roberts D. and The Biodiversity Informatics Community 2013. A decadal view of biodiversity informatics: challenges and priorities. BMC Ecology, 13:16.
  • Thomas Burguiere, Florian Causse, Visotheary Ung, and Régine Vignes-Lebbe, 2013:

    IKey+: A New Single-Access Key Generation Web Service
    Syst Biol (2013) 62(1): 157-161.
  • Zaragüeta-Bagils R., Ung V., Grand A., Vignes-Lebbe R., Cao N., Ducasse J, 2012 : LisBeth : New cladistics for phylogenetics and biogeography. C.R Palevol 11(8):563-566.
  • Mathieu Bruno, Cêtre-Sossah Catherine, Garros Claire, Chavernac David, Balenghien Thomas, Carpenter Simon, Setier-Rio Marie-Laure, Vignes-Lebbe Régine, Ung Visotheary, Candolfi Ermanno and Delécolle Jean-Claude, 2012. Development and validation of IIKC: an interactive identification key for Culicoides (Diptera: Ceratopogonidae) females from the Western Palaearctic region. Parasites & Vectors 2012, 5:137 doi:10.1186/1756-3305-5-137
  • Kerner A., Vignes Lebbe R. & Debrenne F. (2011).- Computer-aided identification of the Archaeocyatha genera now available online.- Carnets de Géologie – Notebooks on Geology, Brest, Letter 2011/02 (CG2011_L02), p. 99-102, 2 figs. voir…
  • Nimis P.L., Vignes Lebbe R. (eds.), 2010 : Tools for Identifying Biodiversity: Progress and Problems. ISBN 978-88-8303-295-0, EUT, 455 pp. voir…
  • Ung V., Dubus G., Zaragüeta-Bagils R. & Vignes-Lebbe R., 2010 : Xper²: introducing e-Taxonomy. Bioinformatics, Vol. 26, Num.5: 703-704.
  • Zaragüeta-Bagils R., Bourdon E., Ung V., Vignes-Lebbe R. et Malécot V., 2009 : Comments on the International Code of Area Nomenclature. Journal of Biogeography, 38 : 1617-1619.
  • Messiaen S., Vignes-Lebbe R., Aragon S., 2008. La reflexion semantica: primera etapa en el proceso de informatizacion de una coleccion universitaria de ciencias naturals con vocacion pedagogica. Revista de Museologia #43: 56-65.
  • Cao, N., Zaragüeta-Bagils, R. & Vignes-Lebbe, R. , 2007. A hierarchical representation of the hypothesis of homology. Geodiversitas 29:5-15.
  • Jacques, F. Gallut, C. Vignes-Lebbe, R. & Zaragüeta Bagils, R., 2007. Resolving phylogenetic reconstruction in Menispermaceae (Ranunculales) using fossils and a novel statistical test. Taxon 56 (2) : 379-392